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Systematic Study of E3 Ubiquitin Ligases

Introduction E3 ubiquitin ligases are key components of the ubiquitin–proteasome system, selecting and tagging target proteins for degradation or regulation. With over 600 members, they control vital processes such as cell cycle, DNA repair, and immune signaling. Dysregulated E3 activity drives cancer, neurodegeneration, and inflammation, making E3s important targets for mechanistic studies and drug development.

Fig. Overview of the cascade process of ubiquitination. 

GeneCopoeia offers a complete workflow for systematic E3 ligase studies—covering expression profiling, promoter/UTR regulation, CRISPR editing, ORF overexpression, and custom cell line generation—enabling researchers to quickly access all products and services needed for E3 functional analysis.

Fig. Systematic study of E3 ubiquitin ligases

   

Infertility and autoimmune antigen array, 25-Plex

Product Information

Autoantibodies are frequently found in women with “unknown” or “unexplained” infertility, suggesting autoimmune processes can disrupt fertility or cause early pregnancy loss. Autoantibodies can exist in both women and men, causing infertility by attacking reproductive tissues (ovaries, sperm) or impairing implantation/hormonal balance, leading to conditions like premature ovarian failure, anti-sperm antibody issues, or systemic autoimmune diseases (lupus, APLS). These autoantibodies can activate immune responses, initiate inflammation, disrupt hormone signals (hypothalamus-pituitary-gonadal axis), and damage reproductive organs by impairing embryo implantation and cause vascular issues in the uterus.

The key autoantibodies that can impact the reproductive system and cause infertility include the following:
  • Anti-Ovarian Antibodies (AOA): Attack ovaries, reducing egg count/quality, potentially causing premature menopause.
  • Anti-Sperm Antibodies (ASA): Can be found in both men (damages sperm movement/survival) and women (attacks sperm), interfering with fertilization.
  • Antiphospholipid Antibodies (aPL): Cause blood clots (antiphospholipid syndrome), harm placental function and cause miscarriage/infertility.
  • Antinuclear Antibodies (ANA): Linked to unexplained infertility, recurrent miscarriages, and implantation failure (e.g., in systemic lupus).
  • Anti-Thyroid Antibodies: Associated with unexplained infertility and miscarriage.
Screening for the infertility-related autoantibodies in women and men may reveal underlying immunopathology in unexplained infertility cases and provide direction for treatment by targeting the underlying autoimmune condition (e.g., steroids, immunosuppressants), which may improve fertility outcomes.

Reference:

The 25 antigens included in the OmicsArray™ Infertility and autoimmune antigen array panel were chosen based on the review of published studies. The superior-quality purified antigens were coated onto the 3D surface of microchips to ensure that antigens retain their natural conformations. Internal Ig and anti-Ig controls are included in each array for normalization and quantification purposes. Additionally, the utilization of fluorescent 2nd antibodies in our microarrays allows for the detection of two types (IgG, IgM, or IgA) of antibodies on the same array, minimizing the requirement of sample needed.

In addition to premade arrays, arrays containing customized sets of antigens are available, as well as array processing kits, array profiling services and data analysis. To order premade or custom arrays, please contact us.

GeneCopoeia’s OmicsArray™ Infertility and autoimmune antigen array is part of the GeneCopoeia OmicsArray™ Antigen Microarray family.

Premade Antigen Arrays

The listed price applies to academic customers. For custom arrays and services pricing, please contact us

Buy Cat. No.Product NameNumber of AntigensApplicationAntigen ListChip Price ($)Service price
PA025OmicsArray™ Infertility and Autoimmune Antigen Array25Large scale detection of autoantibodies associated with infertility caused by autoimmune-related diseases.Download750Inquiry
User Manual
Prices are for customers from the U.S. and Canada only. For other customers, please contact your local distributor for details.

Antigen microarray processing kits and accessories

Buy Cat. No.Product NameApplicationPrice ($)
PA100OmicsArray™ Antigen Microarray Processing Kit, humanfor processing up to 3 slides, or 45 human samples187
PA101OmicsArray™ Antigen Microarray Processing Kit, mousefor processing up to 3 slides, or 45 mouse samples187
PA105OmicsArray™ Antigen Microarray Slides incubation chamber set3 chambers and 1 rack, for processing 3-slides130
PA106OmicsArray™ Antigen Microarray Slides incubation chamber1 chamber, for processing 1-slide42
User Manual SDS
Prices are for customers from the U.S. and Canada only. For other customers, please contact your local distributor for details.

 

Custom services

GeneCopoeia offers custom antigen microarray services in the following areas:
  • Custom array printing. GeneCopoeia will create custom antigen microarrays built to your specifications.
  • Sample processing. Send us your blood, plasma, tissue, or other biological sample and we will prepare it for processing and incubation with any of our premade antigen microarrays or custom-built antigen microarrays for autoantibody profiling and other applications. For information on sample types to submit, consult the FAQ
  • Data analysis. Once samples are processed and incubated with an antigen microarray, we will analyze the raw data. The standard analysis service includes: 1) An Excel file of the Net Signal Intensity (NSI) for each antigen on the array, normalized to internal controls; and 2) a heat map
Additional analysis services, including proteomic analysis, pathway analysis, and more, are also available.

To inquire about custom antigen microarray products and services, please fill out our custom quote request form.

⇒Return to the main OmicsArray™ Antigen Microarray page

HEK293T / anti-CD3 (OKT3) Stable Cell Line

HEK293T / anti-CD3 (OKT3) stable cell line, single clone
HEK293T / anti-CD3 (OKT3) stable cell line, single clone

HEK293T / anti-CD3 (OKT3) stable cell line, single clone

Price: $2,915.00
Catalog#:
  • SL136
Size: 2x106 cells
Qty:
Manual: Download
View your cart


This stable cell line is the HEK293T cell line stably expressing the OKT3, OKT3 is the monoclonal antibody name for CD3. The stable expression of the single-chain variable fragment (scFv) of OKT3 enables the cell line to mimic the function of antigen-presenting cells. This process involves binding to the T cell receptor (TCR/CD3 complex), thereby transmitting the initial activation signal. This cell line is compatible with exogenous gene transfection and can flexibly express co-stimulatory molecules (e.g., CD80, 4-1BBL) or co-inhibitory molecules (e.g., PD-L1, FLRT3) to construct a T cell dual-signal regulation (activation/inhibition) model. The 293T-OKT3 cell line can activate T cells when co-cultured directly with them.

Performance

The Jurkat cell line transfected with NFκB reporter gene or non-responsive element reporter gene was stimulated with OKT3-293T or 293T cell Line for 24 hours. Gaussia luciferase activity was then measured using the Secrete-Pair Gaussia Luciferase Assay Kit (#LF061, GeneCopoeia)

Application

In this study, gain-of-function genetic screens were used to profile axon guidance proteins and their cognate ligands on human T cells. They identified fibronectin leucine-rich transmembrane protein 3 (FLRT3) as a ligand that inhibits T cell activity. (Prajapati et al. Sci Adv. 2024)

Genecopoeia also offers Human ORF library. Uniformity and high-quality make these clone sets ideal for large-scale and high-throughput screening studies for functional genomics, proteomics and systems biology.

Click here for more details.

sgRNA targeting E3 ubiquitin ligases

Introduction

E3 ubiquitin ligases are key components of the ubiquitin–proteasome system (UPS), selecting and tagging target proteins for degradation or regulation. They are responsible for selecting and labelling target proteins for degradation or regulation. The UPS system is the main mechanism by which cells degrade proteins. Its core function involves the coordinated action of E1s, E2s and E3 ubiquitin ligases, which work together to attach ubiquitin molecules to target proteins and mark them for proteasomal degradation. E3 ligases recognise specific substrate proteins and transfer ubiquitin to lysine residues on these proteins.
With over 600 members, they control vital processes such as cell cycle, DNA repair, and immune signalling. Dysregulated E3 activity drives cancer, neurodegeneration, and inflammation, making E3s important targets for mechanistic studies and drug development.

Genecopoeia offers sgRNA targeting E3 ubiquitin ligases for mechanistic studies and drug development.

sgRNA clone list

For clone list please contact us at 1-301-762-0888 or inquiry@genecopoeia.com if you have any questions.
Symbol Target Gene Accession Species Description sgRNA ID
HUWE1 NM_031407.6 Human Homo sapiens HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 (HUWE1), mRNA. HTN290009
TRIM28 NM_005762.2 Human Homo sapiens tripartite motif containing 28 (TRIM28), mRNA. HTN200197
STUB1 NM_005861.3 Human Homo sapiens STIP1 homology and U-box containing protein 1 (STUB1), transcript variant 1, mRNA. HTN290340
KLHL41 NM_006063.2 Human Homo sapiens kelch like family member 41 (KLHL41), mRNA. HTN200400
TRIM22 NM_006074.4 Human Homo sapiens tripartite motif containing 22 (TRIM22), transcript variant 1, mRNA. HTN290423
TRIM38 NM_006355.4 Human Homo sapiens tripartite motif containing 38 (TRIM38), mRNA. HTN290573
RCBTB2 NM_001268.3 Human Homo sapiens RCC1 and BTB domain containing protein 2 (RCBTB2), transcript variant 2, mRNA. HTN291300
WWP1 NM_007013.3 Human Homo sapiens WW domain containing E3 ubiquitin protein ligase 1 (WWP1), mRNA. HTN201203
TRIM31 NM_007028.4 Human Homo sapiens tripartite motif containing 31 (TRIM31), transcript variant 1, mRNA. HTN291354
FBXO32 NM_058229.3 Human Homo sapiens F-box protein 32 (FBXO32), transcript variant 1, mRNA. HTN291933
MARCHF3 NM_178450.4 Human Homo sapiens membrane associated ring-CH-type finger 3 (MARCHF3), mRNA. HTN291953
RNF32 NM_030936.3 Human Homo sapiens ring finger protein 32 (RNF32), transcript variant 3, mRNA. HTN293274
DCST1 NM_152494.3 Human Homo sapiens DC-STAMP domain containing 1 (DCST1), transcript variant 1, mRNA. HTN293722
DTX3L NM_138287.2 Human Homo sapiens deltex E3 ubiquitin ligase 3L (DTX3L), mRNA. HTN203638
RNF217 NM_152553.4 Human Homo sapiens ring finger protein 217 (RNF217), transcript variant 2, mRNA. HTN294117
OTUD7A NM_130901.2 Human Homo sapiens OTU domain containing 7A (OTUD7A), mRNA. Codon-optimized for Homo sapiens. HTN294378
MARCHF10 NM_152598.3 Human Homo sapiens membrane associated ring-CH-type finger 10 (MARCHF10), transcript variant 1, mRNA. HTN294403
DDB1 NM_001923.4 Human Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. HTN294540
KCNG3 NM_133329.5 Human Homo sapiens potassium voltage-gated channel modifier subfamily G member 3 (KCNG3), transcript variant 1, mRNA. HTN294713
DTX1 NM_004416.2 Human Homo sapiens deltex E3 ubiquitin ligase 1 (DTX1), mRNA. HTN204495
DTX3 NM_178502.3 Human Homo sapiens deltex homolog 3 (Drosophila) (DTX3), mRNA. HTN295111
UBR1 NM_174916.2 Human Homo sapiens ubiquitin protein ligase E3 component n-recognin 1 (UBR1), mRNA. HTN204660
FBXO15 NM_152676.2 Human Homo sapiens F-box protein 15 (FBXO15), transcript variant 1, mRNA. HTN295321
RNF152 NM_173557.2 Human Homo sapiens ring finger protein 152 (RNF152), mRNA. HTN205226
FBXL13 NM_145032.3 Human Homo sapiens F-box and leucine rich repeat protein 13 (FBXL13), transcript variant 1, mRNA. HTN205353
LNX2 NM_153371.3 Human Homo sapiens ligand of numb-protein X 2 (LNX2), mRNA. HTN205359
ZNRF2 NM_147128.3 Human Homo sapiens zinc and ring finger 2 (ZNRF2), mRNA. HTN205384
RHOBTB3 NM_014899.3 Human Homo sapiens Rho related BTB domain containing 3 (RHOBTB3), mRNA. HTN205489
KDM2A NM_012308.2 Human Homo sapiens lysine demethylase 2A (KDM2A), transcript variant 1, mRNA. HTN296384
FBXO21 NM_033624.2 Human Homo sapiens F-box protein 21 (FBXO21), transcript variant 1, mRNA. HTN205668
HECW1 NM_015052.4 Human Homo sapiens HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 (HECW1), mRNA. HTN296579
MYCBP2 NM_015057.4 Human Homo sapiens MYC binding protein 2 (MYCBP2), mRNA. HTN296581
TRIM35 NM_171982.4 Human Homo sapiens tripartite motif containing 35 (TRIM35), transcript variant 1, mRNA. HTN296602
CUL9 NM_015089.3 Human Homo sapiens cullin 9 (CUL9), mRNA. HTN296629
FBXW11 NM_012300.2 Human Homo sapiens F-box and WD repeat domain containing 11 (FBXW11), transcript variant 3, mRNA. HTN205960
MGRN1 NM_015246.3 Human Homo sapiens mahogunin ring finger 1 (MGRN1), transcript variant 1, mRNA. HTN296921
NEDD4L NM_015277.5 Human Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like (NEDD4L), transcript variant d, mRNA. HTN296965
KCTD2 NM_015353.2 Human Homo sapiens potassium channel tetramerization domain containing 2 (KCTD2), transcript variant 1, mRNA. HTN297169
RPL13A NM_012423.4 Human Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 1, mRNA. HTN371668
PATZ1 NM_014323.2 Human Homo sapiens POZ/BTB and AT hook containing zinc finger 1 (PATZ1), transcript variant 1, mRNA. HTN206256
MKRN2 NM_014160.4 Human Homo sapiens makorin ring finger protein 2 (MKRN2), transcript variant 1, mRNA. HTN297354
ZBTB38 NM_001080412.2 Human Homo sapiens zinc finger and BTB domain containing 38 (ZBTB38), transcript variant 1, mRNA. HTN206483
SHPRH NM_001042683.2 Human Homo sapiens SNF2 histone linker PHD RING helicase (SHPRH), transcript variant 1, mRNA. HTN297777
FBXO7 NM_012179.3 Human Homo sapiens F-box protein 7 (FBXO7), transcript variant 1, mRNA. HTN206722
ARIH1 NM_005744.3 Human Homo sapiens ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) (ARIH1), mRNA. HTN297840
FBXW2 NM_012164.3 Human Homo sapiens F-box and WD repeat domain containing 2 (FBXW2), transcript variant 1, mRNA. HTN207112
FBXO2 NM_012168.5 Human Homo sapiens F-box protein 2 (FBXO2), mRNA. HTN298348
FBXO10 NM_012166.2 Human Homo sapiens F-box protein 10 (FBXO10), mRNA. HTN207178
FBXO9 NM_012347.4 Human Homo sapiens F-box protein 9 (FBXO9), transcript variant 1, mRNA. HTN207179
FBXO8 NM_012180.2 Human Homo sapiens F-box protein 8 (FBXO8), mRNA. HTN207182

shRNA clone targeting E3 ubiquitin ligases

Introduction

E3 ubiquitin ligases are key components of the ubiquitin–proteasome system (UPS), selecting and tagging target proteins for degradation or regulation. They are responsible for selecting and labelling target proteins for degradation or regulation. The UPS system is the main mechanism by which cells degrade proteins. Its core function involves the coordinated action of E1s, E2s and E3 ubiquitin ligases, which work together to attach ubiquitin molecules to target proteins and mark them for proteasomal degradation. E3 ligases recognise specific substrate proteins and transfer ubiquitin to lysine residues on these proteins.
With over 600 members, they control vital processes such as cell cycle, DNA repair, and immune signalling. Dysregulated E3 activity drives cancer, neurodegeneration, and inflammation, making E3s important targets for mechanistic studies and drug development.

Genecopoeia offers shRNA clone sets against E3 ubiquitin ligases for mechanistic studies and drug development. We provide a shRNA package containing 3 individual shRNA constructs and a scrambled control. Each clone is provided as 5 µg of purified plasmid. A datasheet containing information for each clone, vector and restriction enzyme sites is available for download on our website. You will need a GeneCopoeia account, your sales order number, and your catalog number(s) in order to download the datasheet.

shRNA clone list

For clone list please contact us at 1-301-762-0888 or inquiry@genecopoeia.com if you have any questions.
Symbol Target Gene Accession Species Description shRNA ID
HUWE1 NM_031407.7 Human Homo sapiens HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 (HUWE1), mRNA. HSH167524
TRIM28 NM_005762.2 Human Homo sapiens tripartite motif containing 28 (TRIM28), mRNA. HSH000197
STUB1 NM_005861.3 Human Homo sapiens STIP1 homology and U-box containing protein 1 (STUB1), transcript variant 1, mRNA. HSH090340
KLHL41 NM_006063.3 Human Homo sapiens kelch like family member 41 (KLHL41), mRNA. HSH168006
TRIM22 NM_006074.5 Human Homo sapiens tripartite motif containing 22 (TRIM22), transcript variant 1, mRNA. HSH168049
TRIM38 NM_006355.5 Human Homo sapiens tripartite motif containing 38 (TRIM38), mRNA. HSH168343
RCBTB2 NM_001268.4 Human Homo sapiens RCC1 and BTB domain containing protein 2 (RCBTB2), transcript variant 2, mRNA. HSH151485
WWP1 NM_007013.4 Human Homo sapiens WW domain containing E3 ubiquitin protein ligase 1 (WWP1), mRNA. HSH169498
TRIM31 NM_007028.5 Human Homo sapiens tripartite motif containing 31 (TRIM31), transcript variant 1, mRNA. HSH169542
FBXO32 NM_058229.3 Human Homo sapiens F-box protein 32 (FBXO32), transcript variant 1, mRNA. HSH091933
MARCHF3 NM_178450.5 Human Homo sapiens membrane associated ring-CH-type finger 3 (MARCHF3), mRNA. HSH187414
RNF32 NM_030936.4 Human Homo sapiens ring finger protein 32 (RNF32), transcript variant 3, mRNA. HSH189147
DCST1 NM_152494.4 Human Homo sapiens DC-STAMP domain containing 1 (DCST1), transcript variant 1, mRNA. HSH189755
DTX3L NM_138287.3 Human Homo sapiens deltex E3 ubiquitin ligase 3L (DTX3L), mRNA. HSH093964
RNF217 NM_152553.5 Human Homo sapiens ring finger protein 217 (RNF217), transcript variant 2, mRNA. HSH190192
OTUD7A NM_130901.3 Human Homo sapiens OTU domain containing 7A (OTUD7A), mRNA. Codon-optimized for Homo sapiens. HSH190442
MARCHF10 NM_152598.4 Human Homo sapiens membrane associated ring-CH-type finger 10 (MARCHF10), transcript variant 1, mRNA. HSH190474
DDB1 NM_001923.5 Human Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. HSH152451
KCNG3 NM_133329.6 Human Homo sapiens potassium voltage-gated channel modifier subfamily G member 3 (KCNG3), transcript variant 1, mRNA. HSH190817
DTX1 NM_004416.2 Human Homo sapiens deltex E3 ubiquitin ligase 1 (DTX1), mRNA. HSH004495
DTX3 NM_178502.4 Human Homo sapiens deltex homolog 3 (Drosophila) (DTX3), mRNA. HSH190897
UBR1 NM_174916.3 Human Homo sapiens ubiquitin protein ligase E3 component n-recognin 1 (UBR1), mRNA. HSH190935
FBXO15 NM_152676.3 Human Homo sapiens F-box protein 15 (FBXO15), transcript variant 1, mRNA. HSH191117
RNF152 NM_173557.2 Human Homo sapiens ring finger protein 152 (RNF152), mRNA. HSH005226
FBXL13 NM_145032.3 Human Homo sapiens F-box and leucine rich repeat protein 13 (FBXL13), transcript variant 1, mRNA. HSH005353
LNX2 NM_153371.4 Human Homo sapiens ligand of numb-protein X 2 (LNX2), mRNA. HSH191694
ZNRF2 NM_147128.4 Human Homo sapiens zinc and ring finger 2 (ZNRF2), mRNA. HSH191724
RHOBTB3 NM_014899.4 Human Homo sapiens Rho related BTB domain containing 3 (RHOBTB3), mRNA. HSH170105
KDM2A NM_012308.2 Human Homo sapiens lysine demethylase 2A (KDM2A), transcript variant 1, mRNA. HSH096384
FBXO21 NM_033624.3 Human Homo sapiens F-box protein 21 (FBXO21), transcript variant 1, mRNA. HSH170569
HECW1 NM_015052.5 Human Homo sapiens HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 (HECW1), mRNA. HSH170696
MYCBP2 NM_015057.5 Human Homo sapiens MYC binding protein 2 (MYCBP2), mRNA. HSH170702
TRIM35 NM_171982.5 Human Homo sapiens tripartite motif containing 35 (TRIM35), transcript variant 1, mRNA. HSH170730
CUL9 NM_015089.4 Human Homo sapiens cullin 9 (CUL9), mRNA. HSH170777
FBXW11 NM_012300.3 Human Homo sapiens F-box and WD repeat domain containing 11 (FBXW11), transcript variant 3, mRNA. HSH171219
MGRN1 NM_015246.3 Human Homo sapiens mahogunin ring finger 1 (MGRN1), transcript variant 1, mRNA. HSH096921
NEDD4L NM_015277.5 Human Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like (NEDD4L), transcript variant d, mRNA. HSH096965
KCTD2 NM_015353.3 Human Homo sapiens potassium channel tetramerization domain containing 2 (KCTD2), transcript variant 1, mRNA. HSH171640
RPL13A NM_012423.4 Human Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 1, mRNA. HSH171668
PATZ1 NM_014323.2 Human Homo sapiens POZ/BTB and AT hook containing zinc finger 1 (PATZ1), transcript variant 1, mRNA. HSH006256
MKRN2 NM_014160.5 Human Homo sapiens makorin ring finger protein 2 (MKRN2), transcript variant 1, mRNA. HSH171883
ZBTB38 NM_001080412.3 Human Homo sapiens zinc finger and BTB domain containing 38 (ZBTB38), transcript variant 1, mRNA. HSH191809
SHPRH NM_001042683.3 Human Homo sapiens SNF2 histone linker PHD RING helicase (SHPRH), transcript variant 1, mRNA. HSH192102
FBXO7 NM_012179.4 Human Homo sapiens F-box protein 7 (FBXO7), transcript variant 1, mRNA. HSH172153
ARIH1 NM_005744.5 Human Homo sapiens ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) (ARIH1), mRNA. HSH172188
FBXW2 NM_012164.4 Human Homo sapiens F-box and WD repeat domain containing 2 (FBXW2), transcript variant 1, mRNA. HSH172891
FBXO2 NM_012168.6 Human Homo sapiens F-box protein 2 (FBXO2), mRNA. HSH172912
FBXO10 NM_012166.3 Human Homo sapiens F-box protein 10 (FBXO10), mRNA. HSH172954
FBXO9 NM_012347.4 Human Homo sapiens F-box protein 9 (FBXO9), transcript variant 1, mRNA. HSH007179
FBXO8 NM_012180.3 Human Homo sapiens F-box protein 8 (FBXO8), mRNA. HSH172956